PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400015851
Common NameLOC102597639
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 237aa    MW: 26338.3 Da    PI: 4.9918
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400015851genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.6e-3053111259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++WrKYGqK++kgs++pr+YYrC+s+ gC++kk+ver+++d ++++itY+++Hnh+
  PGSC0003DMP400015851  53 SDCWSWRKYGQKPIKGSPYPRGYYRCSSSkGCSAKKQVERCSKDASLFVITYTSSHNHP 111
                           699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-3144113IPR003657WRKY domain
SuperFamilySSF1182901.19E-2549113IPR003657WRKY domain
SMARTSM007741.9E-3452112IPR003657WRKY domain
PROSITE profilePS5081130.33153113IPR003657WRKY domain
PfamPF031061.1E-2454111IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRSKPTKSQ SKTSRLLQPQ FLASKNRKMA QKVVITVQME AKSLKQKNEG PPSDCWSWRK  60
YGQKPIKGSP YPRGYYRCSS SKGCSAKKQV ERCSKDASLF VITYTSSHNH PGPNLPKDSV  120
TQEQIVDQHV SLEDNNDDDD DNDDTQSCKS PLNSTTTGTS IPQGILEENL FSDSFLGTIS  180
YDDFLPLSYP QLMKFPKSEL SEENDFYDEL GELELPPSST SFAGIFEEAI LVDPSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-18531131574WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164982.11e-175PREDICTED: probable WRKY transcription factor 65 isoform X2
TrEMBLM1AI281e-175M1AI28_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000232721e-161(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-35WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]